project:opensnp
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openSNP (open genetics data)
We split into two groups:
- trying to run a GWAS, comparing the genotypes of openSNP users to the 1000 Genomes data set, to see whether there are significantly overrepresented variants in openSNP users
- trying to recreate the main graphics of this publication, a graph of a principal component analysis which shows that genetic variation clusters well according to geography: http://www.nature.com/nature/journal/v456/n7218/fig_tab/nature07331_F1.html
Doing a PCA w/ openSNP data
- Decided to only use data from 23andMe
Data
- List and link your actual and ideal data sources.
Team
- and other team members
Links
- Repo for doing PCA on openSNP: https://github.com/ciyer/opensnp-fun
project/opensnp.1433589589.txt.gz ยท Last modified: 2015/06/06 13:19 by gedankenstuecke