Differences
This shows you the differences between two versions of the page.
| Both sides previous revision Previous revision Next revision | Previous revisionLast revisionBoth sides next revision | ||
| project:opensnp [2015/06/06 18:26] – [Links] gedankenstuecke | project:opensnp [2015/06/06 18:29] – [Doing a PCA w/ openSNP data] gedankenstuecke | ||
|---|---|---|---|
| Line 7: | Line 7: | ||
| ==== Doing a PCA w/ openSNP data ==== | ==== Doing a PCA w/ openSNP data ==== | ||
| + | [[https:// | ||
| + | |||
| This is done in multiple steps with the help of PLINK and SmartPCA: | This is done in multiple steps with the help of PLINK and SmartPCA: | ||
| Line 66: | Line 68: | ||
| * The plots here were done on all SNPs, not the subsampled ones (as I didn't notice that it wasn't done automatically…). Should re-run it on the less autocorrelated set | * The plots here were done on all SNPs, not the subsampled ones (as I didn't notice that it wasn't done automatically…). Should re-run it on the less autocorrelated set | ||
| * Right now the scripts for generating all the data are messy at best and can't be run automatically, | * Right now the scripts for generating all the data are messy at best and can't be run automatically, | ||
| + | * Include the 1000Genomes data, not done so far. | ||
| * Go wild! | * Go wild! | ||
| ===== Data ===== | ===== Data ===== | ||