project:genestobiodiversity

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
Next revision		 Previous revision
project:genestobiodiversity [2015/06/06 14:20] – donatproject:genestobiodiversity [2015/06/25 06:55] (current) – donat
Line 47: Line 47:
 === Solution === === Solution ===
  
-A link from NCBI will find all the synonyms of the names in NCBI used for this organism (list of synonym provided by NCBI), which then will be run against nomenclatures on the biodiversity world, and then submitted to Plazi where a summary page with all the taxonomic treatments will be displayed. {{:project:plaziwebsitemockup04_species_level_taxon_summary_page.png?200 |}} The data will be available as [[ http://treatment.plazi.org/id/31F96F41-E3E0-02BD-8898-5A4F3A20E45A|html]], [[http://plazi.cs.umb.edu/GgServer/xslt/31F96F41E3E002BD88985A4F3A20E45A|XML]] and [[http://plazi.cs.umb.edu/GgServer/rdf/31F96F41E3E002BD88985A4F3A20E45A|RDF]] (the example are here for single taxonomic treatments)+A link from NCBI will find all the synonyms of the names in NCBI used for this organism (list of synonym provided by NCBI), which then will be run against nomenclatures on the biodiversity world, and then submitted to Plazi where a summary page with all the taxonomic treatments will be displayed. 
 + 
 +{{:project:plaziwebsitemockup04_species_level_taxon_summary_page.png?200 |}}  
 + 
 +The data will be available as [[ http://treatment.plazi.org/id/31F96F41-E3E0-02BD-8898-5A4F3A20E45A|html]], [[http://plazi.cs.umb.edu/GgServer/xslt/31F96F41E3E002BD88985A4F3A20E45A|XML]] and [[http://plazi.cs.umb.edu/GgServer/rdf/31F96F41E3E002BD88985A4F3A20E45A|RDF]] (the example are here for single taxonomic treatments)
  
  
 The project will be continued and hopefully tested and implemented via the NCBI link out option. The project will be continued and hopefully tested and implemented via the NCBI link out option.
 +
 +=== Follow up===
 +
 +On June 26, this project has been implemented and provides the descriped linkout from NCBI: the above example [[https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=269309|Anochetus grandidieri]] as well as all the 15764 [[http://tinyurl.com/nzjrjyj|Binominals]] (Scientific Latin Names) that Plazi shares with NCBI taxonomy
 +
  
 === Links === === Links ===
Line 61: Line 70:
 ===== Team ===== ===== Team =====
  
-  * [[user:donat]] +  * [[user:donat]] Agosti, Plazi
-  * Elena Mastrandrea, HTW Chur +
-  * Philipp Kuntschik, HTW Chur+
   * Terry Catapano, Plazi    * Terry Catapano, Plazi 
 +  * Mara Hellstern
 +  * Philipp Kuntschik, HTW Chur  
   * Guido Sautter, Plazi   * Guido Sautter, Plazi
 +  * Elena Mastrandrea, HTW Chur
  
  
      
 {{tag>status:concept needs:dev needs:design needs:data needs:expert}} {{tag>status:concept needs:dev needs:design needs:data needs:expert}}
  • project/genestobiodiversity.1433593229.txt.gz
  • Last modified: 2015/06/06 14:20
  • by donat